AQUA-FAANG Final Conference
Day 2 Program
Thursday 12th October
Session 3: Functional genomic basis for immune responses and disease resistance in farmed fish
9:00-9:20 Genome functional annotation of host defense response in gilthead sea bream (Sparus aurata) through chromatin accessibility and differential gene expression assays - Costas Tsigenopoulos, HCMR
9:20-9:40 Transcriptome and chromatin landscape of European seabass immune response to viral-like stimulation - Serena Ferraresso, UNIPD
9:40-10:00 Functional genomic architecture of viral nervous necrosis disease resistance in farmed European seabass - Robert Mukiibi, University of Edinburgh
10:00-10:45 Decoding enhancer function: from the nucleosome to the nucleus - Guest Speaker: Wendy Bickmore, University of Edinburgh
Coffee break 10:45-11:20
11:20-11:40 Transcriptional differences in CyHV-3 response between resistant and susceptible common carp (Cyprinus carpio) crossings - Lukasz Napora-Rutkowski, ZIGR
11:40-12:00 Symmetric expression of ohnologs encoding conserved antiviral responses in tetraploid common carp suggest absence of subgenome dominance after whole genome duplication - Hendrik-Jan Megens, Wageningen University
12:00-12:20 Multiomics reveals the genomic regulatory landscape underlying the antiviral response in Atlantic salmon - Shahmir Naseer, University of Aberdeen
12:20-12:40 In vitro mutant models for functional characterization of genes of the type I IFN pathway in salmonids - Pierre Boudinot, INRAe
12:40-13:00: Multiomics uncovers the epigenomic and transcriptomic response to viral and bacterial stimulation in turbot - Oscar Aramburu, USC
Session 3: Functional genomic basis for immune responses and disease resistance in farmed fish
9:00-9:20 Genome functional annotation of host defense response in gilthead sea bream (Sparus aurata) through chromatin accessibility and differential gene expression assays - Costas Tsigenopoulos, HCMR
9:20-9:40 Transcriptome and chromatin landscape of European seabass immune response to viral-like stimulation - Serena Ferraresso, UNIPD
9:40-10:00 Functional genomic architecture of viral nervous necrosis disease resistance in farmed European seabass - Robert Mukiibi, University of Edinburgh
10:00-10:45 Decoding enhancer function: from the nucleosome to the nucleus - Guest Speaker: Wendy Bickmore, University of Edinburgh
Coffee break 10:45-11:20
11:20-11:40 Transcriptional differences in CyHV-3 response between resistant and susceptible common carp (Cyprinus carpio) crossings - Lukasz Napora-Rutkowski, ZIGR
11:40-12:00 Symmetric expression of ohnologs encoding conserved antiviral responses in tetraploid common carp suggest absence of subgenome dominance after whole genome duplication - Hendrik-Jan Megens, Wageningen University
12:00-12:20 Multiomics reveals the genomic regulatory landscape underlying the antiviral response in Atlantic salmon - Shahmir Naseer, University of Aberdeen
12:20-12:40 In vitro mutant models for functional characterization of genes of the type I IFN pathway in salmonids - Pierre Boudinot, INRAe
12:40-13:00: Multiomics uncovers the epigenomic and transcriptomic response to viral and bacterial stimulation in turbot - Oscar Aramburu, USC
